NextSeq 500 sequencing - SRA

ERX2619671: NextSeq 500 sequencing
1 ILLUMINA (NextSeq 500) run: 38.6M spots, 2.9G bases, 1.1Gb downloads

Design: Cytoplasmic RNA-Seq of LoVo cells at time 10h post-infection with Listeria monocytogenes

Submitted by: IBENS (Institut de Biologie de Ecole normale superieure ()

Study: Ribosome profiling and RNA sequencing of human LoVo epithelial cells in response to infection by Listeria monocytogenes

PRJEB26593 • ERP108595 • All experiments • All runs

show Abstracthide Abstract

Host cell gene expression response to a bacterial infection can involve changes at the transcriptional and/or translational levels. To discriminate between these two levels of regulations, we have analyzed the translatome by ribosome profiling (Ribo-Seq), and transcriptome by RNA-Seq analysis, of a human epithelial colon adenocarcinoma cell line (LoVo ATCC CCL-229) along a 0- to 10-h time-course of infection by Listeria monocytogenes strain LL195.

Sample: LoVo cells 10h after infection by Listeria monocytogenes strain LL195 - Replicate 3

SAMEA4698434 • ERS2518606 • All experiments • All runs

Organism: Homo sapiens

Library:

Name: Cytoplasmic RNA-Seq of LoVo cells at time 10h post-infection), replicate 1

Instrument: NextSeq 500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Illumina TruSeq Stranded with RiboZero ribodepletion

Runs: 1 run, 38.6M spots, 2.9G bases, 1.1Gb

Run	# of Spots	# of Bases	Size	Published
ERR2603015	38,582,690	2.9G	1.1Gb	2020-05-29

ID:: 10955547

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